source: LinearAlgebra/doc/Doxyfile@ 689639

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 Candidate_v1.7.0 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 689639 was ec188c, checked in by Frederik Heber <heber@…>, 14 years ago

Fixed Doxygen usage.

  • using now functions from ac_doxygen.m4, added TOP_SRCDIR to DX_ENV_APPENDs.
  • Doxyfile's now used environment variables set by these functions.
  • ac_doxygen.m4 patched with this due to "not a valid shell variable" bug: ​https://issues.apache.org/jira/browse/AMQCPP-191
  • used aminclude.m4 from doxample (by Oren Ben-Tiki) renamed to ac_doxygen_include.am.
  • added phony target doc that calls doxygen-doc for both molecuilder and LinearAlgebra.
  • DOCUFIX: fixed a doxygen bug in analysis_correlation.cpp: getDipole().
  • Doxyfile(s): Both INPUTs point now to $(TOP_SRCDIR)/src, which is correct for both (separate) packages.
  • configure sets docdir as doc target dir.
  • Property mode set to 100755
File size: 9.4 KB
RevLine 
[bf4b9f]1# Doxyfile 1.4.5
2
3#---------------------------------------------------------------------------
4# Project related configuration options
5#---------------------------------------------------------------------------
[ec188c]6PROJECT_NAME = $(PROJECT)
7PROJECT_NUMBER = $(VERSION)
8OUTPUT_DIRECTORY = $(DOCDIR)
[bf4b9f]9CREATE_SUBDIRS = NO
10OUTPUT_LANGUAGE = English
11USE_WINDOWS_ENCODING = YES
12BRIEF_MEMBER_DESC = YES
13REPEAT_BRIEF = YES
14ABBREVIATE_BRIEF = "The $name class" \
15 "The $name widget" \
16 "The $name file" \
17 is \
18 provides \
19 specifies \
20 contains \
21 represents \
22 a \
23 an \
24 the
25ALWAYS_DETAILED_SEC = NO
26INLINE_INHERITED_MEMB = NO
27FULL_PATH_NAMES = YES
28STRIP_FROM_PATH = ../bin/
29STRIP_FROM_INC_PATH =
30SHORT_NAMES = NO
31JAVADOC_AUTOBRIEF = YES
32MULTILINE_CPP_IS_BRIEF = NO
33DETAILS_AT_TOP = NO
34INHERIT_DOCS = YES
35SEPARATE_MEMBER_PAGES = NO
36TAB_SIZE = 3
37ALIASES =
38OPTIMIZE_OUTPUT_FOR_C = YES
39OPTIMIZE_OUTPUT_JAVA = NO
40#BUILTIN_STL_SUPPORT = NO
41DISTRIBUTE_GROUP_DOC = NO
42SUBGROUPING = YES
43#---------------------------------------------------------------------------
44# Build related configuration options
45#---------------------------------------------------------------------------
46EXTRACT_ALL = YES
47EXTRACT_PRIVATE = YES
48EXTRACT_STATIC = YES
49EXTRACT_LOCAL_CLASSES = YES
50EXTRACT_LOCAL_METHODS = YES
51HIDE_UNDOC_MEMBERS = NO
52HIDE_UNDOC_CLASSES = NO
53HIDE_FRIEND_COMPOUNDS = NO
54HIDE_IN_BODY_DOCS = NO
55INTERNAL_DOCS = YES
56CASE_SENSE_NAMES = NO
57HIDE_SCOPE_NAMES = NO
58SHOW_INCLUDE_FILES = YES
59INLINE_INFO = YES
60SORT_MEMBER_DOCS = YES
61SORT_BRIEF_DOCS = NO
62SORT_BY_SCOPE_NAME = NO
63GENERATE_TODOLIST = YES
64GENERATE_TESTLIST = YES
65GENERATE_BUGLIST = YES
66GENERATE_DEPRECATEDLIST= YES
67ENABLED_SECTIONS =
68MAX_INITIALIZER_LINES = 30
69SHOW_USED_FILES = YES
70SHOW_DIRECTORIES = NO
71FILE_VERSION_FILTER =
72#---------------------------------------------------------------------------
73# configuration options related to warning and progress messages
74#---------------------------------------------------------------------------
75QUIET = NO
76WARNINGS = YES
77WARN_IF_UNDOCUMENTED = YES
78WARN_IF_DOC_ERROR = YES
79WARN_NO_PARAMDOC = NO
80WARN_FORMAT = "$file:$line: $text"
81WARN_LOGFILE =
82#---------------------------------------------------------------------------
83# configuration options related to the input files
84#---------------------------------------------------------------------------
[ec188c]85INPUT = $(TOPSRCDIR)/src
[bf4b9f]86FILE_PATTERNS = *.c \
87 *.cc \
88 *.cxx \
89 *.cpp \
90 *.c++ \
91 *.d \
92 *.java \
93 *.ii \
94 *.ixx \
95 *.ipp \
96 *.i++ \
97 *.inl \
98 *.h \
99 *.hh \
100 *.hxx \
101 *.hpp \
102 *.h++ \
103 *.idl \
104 *.odl \
105 *.cs \
106 *.php \
107 *.php3 \
108 *.inc \
109 *.m \
110 *.mm \
111 *.dox \
112 *.py
113RECURSIVE = YES
114EXCLUDE =
115EXCLUDE_SYMLINKS = NO
116EXCLUDE_PATTERNS = */unittests/* \
117 */test/*
118EXAMPLE_PATH =
119EXAMPLE_PATTERNS = *
120EXAMPLE_RECURSIVE = NO
121IMAGE_PATH =
122INPUT_FILTER =
123FILTER_PATTERNS =
124FILTER_SOURCE_FILES = NO
125#---------------------------------------------------------------------------
126# configuration options related to source browsing
127#---------------------------------------------------------------------------
128SOURCE_BROWSER = YES
129INLINE_SOURCES = YES
130STRIP_CODE_COMMENTS = NO
131REFERENCED_BY_RELATION = NO
132REFERENCES_RELATION = NO
133USE_HTAGS = NO
134VERBATIM_HEADERS = NO
135#---------------------------------------------------------------------------
136# configuration options related to the alphabetical class index
137#---------------------------------------------------------------------------
138ALPHABETICAL_INDEX = NO
139COLS_IN_ALPHA_INDEX = 5
140IGNORE_PREFIX =
141#---------------------------------------------------------------------------
142# configuration options related to the HTML output
143#---------------------------------------------------------------------------
144GENERATE_HTML = YES
145HTML_OUTPUT = html
146HTML_FILE_EXTENSION = .html
147HTML_HEADER =
148HTML_FOOTER =
149HTML_STYLESHEET =
150HTML_ALIGN_MEMBERS = YES
151GENERATE_HTMLHELP = NO
152CHM_FILE =
153HHC_LOCATION =
154GENERATE_CHI = NO
155BINARY_TOC = NO
156TOC_EXPAND = NO
157DISABLE_INDEX = NO
158ENUM_VALUES_PER_LINE = 4
159GENERATE_TREEVIEW = NO
160TREEVIEW_WIDTH = 250
161#---------------------------------------------------------------------------
162# configuration options related to the LaTeX output
163#---------------------------------------------------------------------------
164GENERATE_LATEX = NO
165LATEX_OUTPUT = latex
166LATEX_CMD_NAME = latex
167MAKEINDEX_CMD_NAME = makeindex
168COMPACT_LATEX = NO
169PAPER_TYPE = a4wide
170EXTRA_PACKAGES =
171LATEX_HEADER =
172PDF_HYPERLINKS = YES
173USE_PDFLATEX = YES
174LATEX_BATCHMODE = NO
175LATEX_HIDE_INDICES = NO
176#---------------------------------------------------------------------------
177# configuration options related to the RTF output
178#---------------------------------------------------------------------------
179GENERATE_RTF = NO
180RTF_OUTPUT = rtf
181COMPACT_RTF = NO
182RTF_HYPERLINKS = NO
183RTF_STYLESHEET_FILE =
184RTF_EXTENSIONS_FILE =
185#---------------------------------------------------------------------------
186# configuration options related to the man page output
187#---------------------------------------------------------------------------
188GENERATE_MAN = NO
189MAN_OUTPUT = man
190MAN_EXTENSION = .3
191MAN_LINKS = NO
192#---------------------------------------------------------------------------
193# configuration options related to the XML output
194#---------------------------------------------------------------------------
195GENERATE_XML = NO
196XML_OUTPUT = xml
197XML_SCHEMA =
198XML_DTD =
199XML_PROGRAMLISTING = YES
200#---------------------------------------------------------------------------
201# configuration options for the AutoGen Definitions output
202#---------------------------------------------------------------------------
203GENERATE_AUTOGEN_DEF = NO
204#---------------------------------------------------------------------------
205# configuration options related to the Perl module output
206#---------------------------------------------------------------------------
207GENERATE_PERLMOD = NO
208PERLMOD_LATEX = NO
209PERLMOD_PRETTY = YES
210PERLMOD_MAKEVAR_PREFIX =
211#---------------------------------------------------------------------------
212# Configuration options related to the preprocessor
213#---------------------------------------------------------------------------
214ENABLE_PREPROCESSING = YES
215MACRO_EXPANSION = NO
216EXPAND_ONLY_PREDEF = NO
217SEARCH_INCLUDES = YES
218INCLUDE_PATH =
219INCLUDE_FILE_PATTERNS =
220PREDEFINED =
221EXPAND_AS_DEFINED =
222SKIP_FUNCTION_MACROS = YES
223#---------------------------------------------------------------------------
224# Configuration::additions related to external references
225#---------------------------------------------------------------------------
226TAGFILES =
227GENERATE_TAGFILE =
228ALLEXTERNALS = NO
229EXTERNAL_GROUPS = YES
230PERL_PATH = /usr/bin/perl
231#---------------------------------------------------------------------------
232# Configuration options related to the dot tool
233#---------------------------------------------------------------------------
234CLASS_DIAGRAMS = YES
235HIDE_UNDOC_RELATIONS = YES
236HAVE_DOT = NO
237CLASS_GRAPH = YES
238COLLABORATION_GRAPH = YES
239GROUP_GRAPHS = YES
240UML_LOOK = NO
241TEMPLATE_RELATIONS = NO
242INCLUDE_GRAPH = YES
243INCLUDED_BY_GRAPH = YES
244CALL_GRAPH = NO
245GRAPHICAL_HIERARCHY = YES
246DIRECTORY_GRAPH = YES
247DOT_IMAGE_FORMAT = png
248DOT_PATH =
249DOTFILE_DIRS =
250MAX_DOT_GRAPH_WIDTH = 1024
251MAX_DOT_GRAPH_HEIGHT = 1024
252MAX_DOT_GRAPH_DEPTH = 1000
253DOT_TRANSPARENT = NO
254DOT_MULTI_TARGETS = NO
255GENERATE_LEGEND = YES
256DOT_CLEANUP = YES
257#---------------------------------------------------------------------------
258# Configuration::additions related to the search engine
259#---------------------------------------------------------------------------
260SEARCHENGINE = YES
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